halophFGD

Basic Information

Locus ID: AH09.1072

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH09	22900391	22901275	-	AH09.1072

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.10	32,714.41 Da	57.74	96.97	0.05

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
SUPERFAMILY	SSF81383	F-box domain	19	70	1.09E-8	IPR036047
SUPERFAMILY	SSF52047	RNI-like	131	228	1.46E-6	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	85	287	3.0E-7	IPR032675

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT5G22700.6	-	1.45E-8
RefSeq	XP_039771951.1	MEIOTIC F-BOX protein MOF-like [Panicum virgatum]	4.82E-99
Swiss-Prot	Q9FNJ1	F-box/FBD/LRR-repeat protein At5g22700 OS=Arabidopsis thaliana OX=3702 GN=At5g22700 PE=2 SV=2	1.45E-7
TrEMBL	A0A3L6Q5S2	Putative FBD-associated F-box protein OS=Panicum miliaceum OX=4540 GN=C2845_PM15G09060 PE=4 SV=1	1.98E-103

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	1	Sgl51268
Poaceae	Echinochloa crus-galli	31	AH01.1527, AH03.669, AH03.670, AH04.1884, AH04.1885 ... AH09.1070, AH09.1072, AH09.1074, BH03.797, BH03.798, BH04.1916, BH04.1917, BH04.1918, BH07.1796, BH09.1149, BH09.1150, BH09.1151, BH09.1153, BH09.1154, BH09.1155, BH09.1160, BH09.1161, CH03.890, CH03.891, CH04.2256, CH04.2258, CH09.1281, CH09.1282, CH09.1287, CH09.1288, CH09.1291
Poaceae	Eleusine coracana subsp. coracana	16	gene-QOZ80_4AG0316660, gene-QOZ80_4AG0316670 ... gene-QOZ80_4AG0316700, gene-QOZ80_4BG0347870, gene-QOZ80_4BG0347880, gene-QOZ80_4BG0347890, gene-QOZ80_4BG0347900, gene-QOZ80_4BG0347930, gene-QOZ80_4BG0347950, gene-QOZ80_4BG0347960, gene-QOZ80_4BG0347980, gene-QOZ80_5BG0448010, gene-QOZ80_9AG0688290, gene-QOZ80_9AG0688310, gene-QOZ80_9BG0716770, gene-QOZ80_9BG0716790
Poaceae	Hordeum vulgare	9	HORVU.MOREX.r3.2HG0113350.1, HORVU.MOREX.r3.2HG0173930.1 ... HORVU.MOREX.r3.3HG0324350.1, HORVU.MOREX.r3.3HG0329080.1, HORVU.MOREX.r3.4HG0398330.1, HORVU.MOREX.r3.5HG0515150.1.CDS1, HORVU.MOREX.r3.6HG0597680.1, HORVU.MOREX.r3.6HG0624800.1, HORVU.MOREX.r3.6HG0632670.1
Poaceae	Lolium multiflorum	36	gene-QYE76_002125, gene-QYE76_020252, gene-QYE76_022723 ... gene-QYE76_023887, gene-QYE76_026800, gene-QYE76_026837, gene-QYE76_027447, gene-QYE76_033845, gene-QYE76_037310, gene-QYE76_037658, gene-QYE76_041415, gene-QYE76_042114, gene-QYE76_044147, gene-QYE76_044148, gene-QYE76_044157, gene-QYE76_044162, gene-QYE76_044163, gene-QYE76_044165, gene-QYE76_044169, gene-QYE76_044410, gene-QYE76_049203, gene-QYE76_049852, gene-QYE76_049855, gene-QYE76_049903, gene-QYE76_050002, gene-QYE76_050338, gene-QYE76_050339, gene-QYE76_052080, gene-QYE76_053870, gene-QYE76_053871, gene-QYE76_053872, gene-QYE76_064570, gene-QYE76_065702, gene-QYE76_065784, gene-QYE76_068864, gene-QYE76_070044
Poaceae	Oryza coarctata	11	Oco03G024970, Oco07G001490, Oco07G006480, Oco07G006490 ... Oco07G006500, Oco07G007900, Oco07G007930, Oco08G001880, Oco08G006450, Oco08G007830, Oco08G007840
Poaceae	Oryza sativa	12	LOC_Os04g12990.1, LOC_Os04g13010.1, LOC_Os04g13040.1 ... LOC_Os04g35930.1, LOC_Os04g35940.1, LOC_Os04g35970.1, LOC_Os04g35990.1, LOC_Os04g36000.1, LOC_Os04g36010.1, LOC_Os04g36020.1, LOC_Os04g39070.1, LOC_Os04g39080.1
Poaceae	Paspalum vaginatum	15	gene-BS78_02G107100, gene-BS78_05G186700, gene-BS78_K330000 ... gene-BS78_05G199600, gene-BS78_05G199700, gene-BS78_05G199800, gene-BS78_05G199900, gene-BS78_05G200500, gene-BS78_05G200600, gene-BS78_05G232700, gene-BS78_06G104100, gene-BS78_06G104200, gene-BS78_06G104300, gene-BS78_06G104400, gene-BS78_06G104500
Poaceae	Puccinellia tenuiflora	17	Pt_Chr0103073, Pt_Chr0103074, Pt_Chr0103075, Pt_Chr0103076 ... Pt_Chr0104117, Pt_Chr0104119, Pt_Chr0104120, Pt_Chr0104121, Pt_Chr0106209, Pt_Chr0205341, Pt_Chr0303820, Pt_Chr0401094, Pt_Chr0603374, Pt_Chr0604531, Pt_Chr0604666, Pt_Chr0604788, Pt_Chr0702465
Poaceae	Sporobolus alterniflorus	7	Chr01G024980, Chr07G015020, Chr23G012520, Chr26G001820 ... Chr26G007020, Chr28G003530, Chr31G007750
Poaceae	Thinopyrum elongatum	7	Tel4E01G435000, Tel5E01G653900, Tel5E01G886800 ... Tel5E01G887200, Tel6E01G444600, Tel6E01G496200, Tel6E01G642500
Poaceae	Triticum dicoccoides	18	gene_TRIDC2AG013410, gene_TRIDC2BG016320 ... gene_TRIDC2BG047580, gene_TRIDC3AG074830, gene_TRIDC3BG082940, gene_TRIDC3BG086190, gene_TRIDC4AG006730, gene_TRIDC4AG047810, gene_TRIDC4BG044480, gene_TRIDC5AG060400, gene_TRIDC5BG083260, gene_TRIDC6AG035930, gene_TRIDC6AG054100, gene_TRIDC6AG054120, gene_TRIDC6BG023840, gene_TRIDC6BG042610, gene_TRIDC6BG063040, gene_TRIDC6BG063060
Poaceae	Triticum aestivum	30	TraesCS1B02G030200.1, TraesCS2B02G325900.1 ... TraesCS2B02G346600.1, TraesCS2D02G112100.1, TraesCS2D02G307200.1, TraesCS3A02G493200.1, TraesCS3A02G518400.1, TraesCS3A02G529000.1, TraesCS3B02G585800.1, TraesCS3B02G585900.1, TraesCS3B02G598000.1, TraesCS3D02G534300.1, TraesCS4A02G048500.1, TraesCS4A02G048600.1.cds1, TraesCS4A02G316100.1, TraesCS4A02G325200.2, TraesCS4B02G256300.1, TraesCS4D02G364300.1, TraesCS5A02G417200.1, TraesCS5B02G538000.1, TraesCS5D02G425300.1, TraesCS5D02G566400.1, TraesCS6B02G260300.1, TraesCS6B02G297100.1, TraesCS6B02G394600.1, TraesCS6D02G122700.1, TraesCS6D02G215800.1, TraesCS6D02G245100.1, TraesCS6D02G405500.1, TraesCS7A02G139700.1
Poaceae	Zea mays	3	Zm00001eb082190_P001, Zm00001eb082200_P001 ... Zm00001eb082210_P002
Poaceae	Zoysia japonica	1	nbis-gene-43120
Poaceae	Zoysia macrostachya	1	Zma_g18169
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17868
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-2945
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-17858