HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: AH09.1070
Species & Taxonomic ID: Echinochloa crus-galli & 90397
Genome Assembly: GWHBDNR00000000
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
AH09 22882634 22884086 + AH09.1070
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.64 47,838.83 Da 59.78 82.28 -0.35
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
SUPERFAMILY SSF52047 RNI-like 202 372 6.08E-7 -
Gene3D G3DSA:3.80.10.10 Ribonuclease Inhibitor 176 421 1.4E-7 IPR032675
MobiDBLite mobidb-lite consensus disorder prediction 1 48 - -
Best hit
Source Best Hit ID Description E-value
RefSeq XP_034604717.1 MEIOTIC F-BOX protein MOF-like [Setaria viridis] 2.12E-155
TrEMBL A0A3L6Q4N0 F-box domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM15G09050 PE=4 SV=1 9.54E-154
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Amaranthaceae Suaeda glauca 1 Sgl51268
Poaceae Echinochloa crus-galli 31 AH01.1527, AH03.669, AH03.670, AH04.1884, AH04.1885 ...
AH09.1070, AH09.1072, AH09.1074, BH03.797, BH03.798, BH04.1916, BH04.1917, BH04.1918, BH07.1796, BH09.1149, BH09.1150, BH09.1151, BH09.1153, BH09.1154, BH09.1155, BH09.1160, BH09.1161, CH03.890, CH03.891, CH04.2256, CH04.2258, CH09.1281, CH09.1282, CH09.1287, CH09.1288, CH09.1291
Poaceae Eleusine coracana subsp. coracana 16 gene-QOZ80_4AG0316660, gene-QOZ80_4AG0316670 ...
gene-QOZ80_4AG0316700, gene-QOZ80_4BG0347870, gene-QOZ80_4BG0347880, gene-QOZ80_4BG0347890, gene-QOZ80_4BG0347900, gene-QOZ80_4BG0347930, gene-QOZ80_4BG0347950, gene-QOZ80_4BG0347960, gene-QOZ80_4BG0347980, gene-QOZ80_5BG0448010, gene-QOZ80_9AG0688290, gene-QOZ80_9AG0688310, gene-QOZ80_9BG0716770, gene-QOZ80_9BG0716790
Poaceae Hordeum vulgare 9 HORVU.MOREX.r3.2HG0113350.1, HORVU.MOREX.r3.2HG0173930.1 ...
HORVU.MOREX.r3.3HG0324350.1, HORVU.MOREX.r3.3HG0329080.1, HORVU.MOREX.r3.4HG0398330.1, HORVU.MOREX.r3.5HG0515150.1.CDS1, HORVU.MOREX.r3.6HG0597680.1, HORVU.MOREX.r3.6HG0624800.1, HORVU.MOREX.r3.6HG0632670.1
Poaceae Lolium multiflorum 36 gene-QYE76_002125, gene-QYE76_020252, gene-QYE76_022723 ...
gene-QYE76_023887, gene-QYE76_026800, gene-QYE76_026837, gene-QYE76_027447, gene-QYE76_033845, gene-QYE76_037310, gene-QYE76_037658, gene-QYE76_041415, gene-QYE76_042114, gene-QYE76_044147, gene-QYE76_044148, gene-QYE76_044157, gene-QYE76_044162, gene-QYE76_044163, gene-QYE76_044165, gene-QYE76_044169, gene-QYE76_044410, gene-QYE76_049203, gene-QYE76_049852, gene-QYE76_049855, gene-QYE76_049903, gene-QYE76_050002, gene-QYE76_050338, gene-QYE76_050339, gene-QYE76_052080, gene-QYE76_053870, gene-QYE76_053871, gene-QYE76_053872, gene-QYE76_064570, gene-QYE76_065702, gene-QYE76_065784, gene-QYE76_068864, gene-QYE76_070044
Poaceae Oryza coarctata 11 Oco03G024970, Oco07G001490, Oco07G006480, Oco07G006490 ...
Oco07G006500, Oco07G007900, Oco07G007930, Oco08G001880, Oco08G006450, Oco08G007830, Oco08G007840
Poaceae Oryza sativa 12 LOC_Os04g12990.1, LOC_Os04g13010.1, LOC_Os04g13040.1 ...
LOC_Os04g35930.1, LOC_Os04g35940.1, LOC_Os04g35970.1, LOC_Os04g35990.1, LOC_Os04g36000.1, LOC_Os04g36010.1, LOC_Os04g36020.1, LOC_Os04g39070.1, LOC_Os04g39080.1
Poaceae Paspalum vaginatum 15 gene-BS78_02G107100, gene-BS78_05G186700, gene-BS78_K330000 ...
gene-BS78_05G199600, gene-BS78_05G199700, gene-BS78_05G199800, gene-BS78_05G199900, gene-BS78_05G200500, gene-BS78_05G200600, gene-BS78_05G232700, gene-BS78_06G104100, gene-BS78_06G104200, gene-BS78_06G104300, gene-BS78_06G104400, gene-BS78_06G104500
Poaceae Puccinellia tenuiflora 17 Pt_Chr0103073, Pt_Chr0103074, Pt_Chr0103075, Pt_Chr0103076 ...
Pt_Chr0104117, Pt_Chr0104119, Pt_Chr0104120, Pt_Chr0104121, Pt_Chr0106209, Pt_Chr0205341, Pt_Chr0303820, Pt_Chr0401094, Pt_Chr0603374, Pt_Chr0604531, Pt_Chr0604666, Pt_Chr0604788, Pt_Chr0702465
Poaceae Sporobolus alterniflorus 7 Chr01G024980, Chr07G015020, Chr23G012520, Chr26G001820 ...
Chr26G007020, Chr28G003530, Chr31G007750
Poaceae Thinopyrum elongatum 7 Tel4E01G435000, Tel5E01G653900, Tel5E01G886800 ...
Tel5E01G887200, Tel6E01G444600, Tel6E01G496200, Tel6E01G642500
Poaceae Triticum dicoccoides 18 gene_TRIDC2AG013410, gene_TRIDC2BG016320 ...
gene_TRIDC2BG047580, gene_TRIDC3AG074830, gene_TRIDC3BG082940, gene_TRIDC3BG086190, gene_TRIDC4AG006730, gene_TRIDC4AG047810, gene_TRIDC4BG044480, gene_TRIDC5AG060400, gene_TRIDC5BG083260, gene_TRIDC6AG035930, gene_TRIDC6AG054100, gene_TRIDC6AG054120, gene_TRIDC6BG023840, gene_TRIDC6BG042610, gene_TRIDC6BG063040, gene_TRIDC6BG063060
Poaceae Triticum aestivum 30 TraesCS1B02G030200.1, TraesCS2B02G325900.1 ...
TraesCS2B02G346600.1, TraesCS2D02G112100.1, TraesCS2D02G307200.1, TraesCS3A02G493200.1, TraesCS3A02G518400.1, TraesCS3A02G529000.1, TraesCS3B02G585800.1, TraesCS3B02G585900.1, TraesCS3B02G598000.1, TraesCS3D02G534300.1, TraesCS4A02G048500.1, TraesCS4A02G048600.1.cds1, TraesCS4A02G316100.1, TraesCS4A02G325200.2, TraesCS4B02G256300.1, TraesCS4D02G364300.1, TraesCS5A02G417200.1, TraesCS5B02G538000.1, TraesCS5D02G425300.1, TraesCS5D02G566400.1, TraesCS6B02G260300.1, TraesCS6B02G297100.1, TraesCS6B02G394600.1, TraesCS6D02G122700.1, TraesCS6D02G215800.1, TraesCS6D02G245100.1, TraesCS6D02G405500.1, TraesCS7A02G139700.1
Poaceae Zea mays 3 Zm00001eb082190_P001, Zm00001eb082200_P001 ...
Zm00001eb082210_P002
Poaceae Zoysia japonica 1 nbis-gene-43120
Poaceae Zoysia macrostachya 1 Zma_g18169
Rhizophoraceae Carallia pectinifolia 1 nbisL1-mrna-17868
Rhizophoraceae Ceriops tagal 1 nbisL1-mrna-2945
Rhizophoraceae Rhizophora mangle 1 nbisL1-mrna-17858
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.