Basic Information
Locus ID:
AH09.1010
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Plectin/S10 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH09 | 22298492 | 22300883 | + | AH09.1010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.81 | 20,306.65 Da | 40.37 | 49.07 | -0.87 |
Protein Domain:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25740.1 | RNA binding Plectin/S10 domain-containing protein. | 1.56E-78 |
| RefSeq | XP_025824187.1 | 40S ribosomal protein S10-1 [Panicum hallii] | 7.13E-103 |
| P0DKK8 | Small ribosomal subunit protein eS10z OS=Oryza sativa subsp. japonica OX=39947 GN=RPS10-1 PE=2 SV=1 | 4.15E-104 | |
| TrEMBL | A0A0E0K0Y0 | S10_plectin domain-containing protein OS=Oryza punctata OX=4537 PE=3 SV=1 | 3.96E-102 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg13947 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_14711, gene_3245 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah004562, Ah030279 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_3g053340, BVRB_5g099980 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg38456, Sbi_jg4818, Sbi_jg6566, Sbi_jg7267 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg12744, Seu_jg15356 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006455 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl01888, Sgl07066, Sgl65209, Sgl69623 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000005631, gene:ENSEOMG00000006835 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.5BG0007120, CQ.Regalona.r1.7AG0022800 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30135470, pistato.v30183580 |
| Apiaceae | Apium graveolens | 2 | Ag10G02583, Ag3G02006 |
| Arecaceae | Cocos nucifera | 2 | COCNU_01G019180, COCNU_02G010590 |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701249, gene-LOC103703191, gene-LOC103704379 ... |
| Asparagaceae | Asparagus officinalis | 4 | AsparagusV1_02.742.V1.1, AsparagusV1_04.378.V1.1 ... |
| Asteraceae | Flaveria trinervia | 3 | Ftri18G20885, Ftri4G24507, Ftri8G03980 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT4G25740.1, AT5G41520.1, AT5G52650.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10014804m.g.v1.0, Thhalv10026365m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp6g14820.v2.2, Sp7g23770.v2.2 |
| Brassicaceae | Brassica nigra | 9 | BniB01g024880.2N, BniB02g030350.2N, BniB02g082100.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G0286, Ceq09G1486 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G0332, Cgl03G0369, Cgl09G1577 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno07g01280, gene.Cymno08g07800 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0053s00007.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g14060, gene.Thate09g01640 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1625, nbisL1-mrna-8457 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.2785, evm.TU.LG10.1448 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010578, Pov_00041024 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb0G38044, Lb1G03924, Lb3G21086 |
| Poaceae | Echinochloa crus-galli | 6 | AH02.4604, AH09.1010, BH02.4662, BH09.1082, CH02.4710 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_1AG0047510, gene-QOZ80_1BG0097440 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_016920, gene-QYE76_058782 |
| Poaceae | Oryza coarctata | 5 | Oco01G030590, Oco02G031690, Oco04G014160, Oco07G005900 ... |
| Poaceae | Oryza sativa | 3 | LOC_Os01g73160.1, LOC_Os02g34460.2, LOC_Os04g35090.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_03G410600, gene-BS78_03G412700 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0302687, Pt_Chr0302727, Pt_Chr0600869, Pt_Chr0605886 |
| Poaceae | Sporobolus alterniflorus | 8 | Chr02G000530, Chr03G023800, Chr05G034250, Chr08G017930 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel2E01G534300, Tel3E01G842100, Tel4E01G265900 |
| Poaceae | Triticum dicoccoides | 8 | gene_TRIDC1AG048620, gene_TRIDC1BG053260 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G302600.1, TraesCS2B02G318500.1 ... |
| Poaceae | Zea mays | 7 | Zm00001eb024580_P001, Zm00001eb082850_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-28090, nbis-gene-37861, nbis-gene-7670 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g11988, Zma_g19699, Zma_g21283 |
| Portulacaceae | Portulaca oleracea | 5 | evm.TU.LG01.1438, evm.TU.LG10.494, evm.TU.LG14.1491 ... |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g16800, gene.Posoc05g20370 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.1436 ... |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-12731, nbisL1-mrna-22387, nbisL1-mrna-29254 |
| Rhizophoraceae | Ceriops tagal | 3 | nbisL1-mrna-10281, nbisL1-mrna-14436, nbisL1-mrna-5512 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20345, nbisL1-mrna-2193, nbisL1-mrna-22446 |
| Rhizophoraceae | Kandelia candel | 3 | evm.TU.utg000008l.51, evm.TU.utg000010l.403 ... |
| Rhizophoraceae | Kandelia obovata | 3 | Maker00000988, Maker00008667, Maker00014337 |
| Rhizophoraceae | Rhizophora apiculata | 3 | nbisL1-mrna-1111, nbisL1-mrna-2330, nbisL1-mrna-3543 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20550, nbisL1-mrna-6311 |
| Salicaceae | Populus euphratica | 4 | populus_peu09803, populus_peu13463, populus_peu15802 ... |
| Solanaceae | Lycium barbarum | 4 | gene-LOC132604292, gene-LOC132609088, gene-LOC132611468 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI002319400, SOLCI006480400 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107007590, gene-LOC107008029 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_14765, gene_5230 |
| Tamaricaceae | Tamarix chinensis | 3 | TC01G3375, TC06G2328, TC08G1541 |
| Zosteraceae | Zostera marina | 2 | Zosma04g14810.v3.1, Zosma04g16410.v3.1 |