Basic Information
Locus ID:
AH08.998
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 16670147 | 16691249 | - | AH08.998 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 91,830.95 Da | 45.16 | 90.56 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 455 | 650 | 1.53687E-29 | - |
| CDD | cd00030 | C2 | 285 | 387 | 9.41722E-28 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 476 | 605 | 5.8E-25 | IPR000477 |
| Pfam | PF00168 | C2 domain | 283 | 387 | 4.1E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 92 | 270 | 5.3E-18 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 276 | 389 | 1.64E-29 | IPR035892 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 460 | 607 | 8.0E-9 | IPR043502 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 275 | 404 | 5.3E-30 | IPR035892 |
| SMART | SM00239 | C2_3c | 284 | 384 | 2.7E-23 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 261 | 385 | 20.974819 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 88 | 270 | 29.181084 | IPR031468 |
| Coils | Coil | Coil | 77 | 97 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 7.64E-167 |
| RefSeq | XP_004973183.1 | synaptotagmin-5 [Setaria italica] | 1.19E-223 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 7.35E-166 | |
| TrEMBL | A0A3L6FRR0 | Synaptotagmin-5 OS=Zea mays OX=4577 GN=SYT5_0 PE=3 SV=1 | 2.86E-227 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology