Basic Information
Locus ID:
AH08.913
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 14405203 | 14406533 | + | AH08.913 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 8,921.01 Da | 55.63 | 76.46 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 28 | 78 | 6.5E-14 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 78 | 1.98E-17 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 8 | 79 | 8.2E-19 | IPR016135 |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 79 | 20.465668 | IPR000608 |
KEGG Pathway
Pathway:
ko04013 (MAPK signaling pathway - fly)
map04013 (MAPK signaling pathway - fly)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04624 (Toll and Imd signaling pathway)
map04624 (Toll and Imd signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53300.3 | ubiquitin-conjugating enzyme 10. Encodes a ubiquitin conjugating enzyme. | 1.82E-26 |
| RefSeq | XP_002448725.1 | ubiquitin-conjugating enzyme E2 28 [Sorghum bicolor] | 4.06E-27 |
| Q8S920 | Ubiquitin-conjugating enzyme E2 5A OS=Oryza sativa subsp. japonica OX=39947 GN=UBC5A PE=2 SV=1 | 1.51E-26 | |
| TrEMBL | Q8RXA0 | Elicitor and UV light related transcription factor OS=Oryza sativa OX=4530 GN=Elr PE=2 SV=1 | 8.94E-26 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G2203 |
| Poaceae | Echinochloa crus-galli | 1 | AH08.913 |
| Poaceae | Triticum aestivum | 1 | TraesCS3A02G487000.1 |