Basic Information
Locus ID:
AH08.907
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 14168325 | 14183407 | - | AH08.907 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 126,420.07 Da | 49.01 | 76.73 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 1045 | 1094 | 2.3106E-5 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 859 | 979 | 7.3E-13 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 823 | 853 | 2.0E-5 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 995 | 1024 | 9.9E-5 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 791 | 1028 | 7.71E-43 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1043 | 1102 | 4.95E-8 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 784 | 914 | 4.4E-28 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1036 | 1113 | 2.8E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 915 | 1035 | 3.7E-20 | IPR036770 |
| SMART | SM00248 | ANK_2a | 951 | 980 | 1.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 888 | 918 | 160.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 854 | 883 | 0.022 | IPR002110 |
| SMART | SM00248 | ANK_2a | 821 | 850 | 2.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 994 | 1023 | 4.6E-4 | IPR002110 |
| SMART | SM00184 | ring_2 | 1045 | 1094 | 7.2E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1045 | 1095 | 10.33534 | IPR001841 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 994 | 1025 | 10.471169 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 994 | 1026 | 11.674439 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 854 | 886 | 9.29725 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 854 | 885 | 8.534378 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 821 | 852 | 11.850801 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 951 | 979 | 12.832462 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 951 | 983 | 13.35717 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 821 | 853 | 12.636 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 1060 | 1069 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 952 | 967 | 3.3E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 1010 | 1024 | 3.3E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 512 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 544 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 352 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 545 | - | - |
| Coils | Coil | Coil | 582 | 602 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 5.93E-109 |
| RefSeq | XP_025822569.1 | probable E3 ubiquitin-protein ligase XBOS35 [Panicum hallii] | 1.07E-212 |
| Q7EZ44 | Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS35 PE=2 SV=1 | 1.17E-185 | |
| TrEMBL | A0A2T7D5L2 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G092200 PE=4 SV=1 | 2.41E-211 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||