Basic Information
Locus ID:
AH08.906
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 14155446 | 14162905 | - | AH08.906 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.94 | 79,199.86 Da | 67.00 | 79.96 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 568 | 617 | 2.27757E-4 | - |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 335 | 455 | 3.6E-13 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 471 | 500 | 5.7E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 267 | 328 | 3.6E-6 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 566 | 625 | 2.65E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 260 | 523 | 1.28E-48 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 255 | 389 | 5.7E-29 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 555 | 636 | 1.5E-7 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 390 | 528 | 1.3E-24 | IPR036770 |
| SMART | SM00248 | ANK_2a | 364 | 394 | 160.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 470 | 499 | 4.6E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 427 | 456 | 1.8E-5 | IPR002110 |
| SMART | SM00184 | ring_2 | 568 | 617 | 7.2E-5 | IPR001841 |
| SMART | SM00248 | ANK_2a | 330 | 359 | 0.022 | IPR002110 |
| SMART | SM00248 | ANK_2a | 297 | 326 | 2.3E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 262 | 291 | 3900.0 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 297 | 328 | 11.850801 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 330 | 362 | 9.29725 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 470 | 501 | 10.471169 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 297 | 329 | 12.636 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 427 | 455 | 12.832462 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 427 | 459 | 13.35717 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 330 | 361 | 8.534378 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 568 | 618 | 10.33534 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 470 | 502 | 11.674439 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 583 | 592 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 428 | 443 | 1.4E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 486 | 500 | 1.4E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 21 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 76 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 76 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 2.2E-133 |
| RefSeq | XP_025822569.1 | probable E3 ubiquitin-protein ligase XBOS35 [Panicum hallii] | 1.49E-281 |
| Q7EZ44 | Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS35 PE=2 SV=1 | 2.58E-241 | |
| TrEMBL | A0A2T7D5L2 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G092200 PE=4 SV=1 | 3.37E-280 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology