Basic Information
Locus ID:
AH08.757
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DDE superfamily endonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 10612806 | 10622458 | - | AH08.757 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 156,025.97 Da | 58.30 | 73.94 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 1067 | 1114 | 5.45206E-5 | IPR002083 |
| CDD | cd00121 | MATH | 43 | 149 | 5.91952E-17 | IPR002083 |
| Pfam | PF13359 | DDE superfamily endonuclease | 887 | 1008 | 6.4E-16 | IPR027806 |
| Pfam | PF00651 | BTB/POZ domain | 190 | 280 | 1.4E-12 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 1065 | 1116 | 3.43E-7 | - |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 30 | 153 | 8.01E-21 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 161 | 279 | 5.1E-18 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 153 | 303 | 2.1E-29 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 28 | 152 | 6.4E-17 | IPR008974 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 1064 | 1119 | 4.7E-5 | IPR008974 |
| SMART | SM00225 | BTB_4 | 172 | 281 | 3.3E-9 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 27 | 148 | 13.921859 | IPR002083 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 189 | 242 | 10.095861 | IPR000210 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1279 | 1333 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 330 | 346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 301 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 570 | 624 | - | - |
| Coils | Coil | Coil | 566 | 593 | - | - |
| Coils | Coil | Coil | 645 | 672 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G43722.1 | 6.16E-43 | |
| RefSeq | XP_025800677.1 | protein ALP1-like [Panicum hallii] | 1.86E-162 |
| A1L4W5 | BTB/POZ and MATH domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=BPM6 PE=1 SV=1 | 1.39E-30 | |
| TrEMBL | A0A0A9HX78 | DDE Tnp4 domain-containing protein OS=Arundo donax OX=35708 PE=3 SV=1 | 4.74E-107 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Brassica nigra | 1 | BniB03g058380.2N |
| Poaceae | Echinochloa crus-galli | 24 | AH01.4755, AH02.2722, AH04.1015, AH05.1286, AH05.1766 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0063290 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0136190.1 |
| Poaceae | Oryza sativa | 1 | LOC_Os05g46770.1 |
| Poaceae | Paspalum vaginatum | 13 | gene-BS78_01G057300, gene-BS78_02G211300, gene-BS78_K021000 ... |
| Poaceae | Sporobolus alterniflorus | 18 | Chr01G028140, Chr02G020120, Chr02G020680, Chr03G014060 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G440600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG030720, gene_TRIDC2AG037920 ... |
| Poaceae | Zea mays | 4 | Zm00001eb009750_P001, Zm00001eb012990_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-21483 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10439 |