halophFGD

Basic Information

Locus ID: AH08.727

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Speckle-type POZ protein-like protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH08	10003960	10004593	-	AH08.727

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.56	20,035.68 Da	48.34	79.95	-0.08

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00121	MATH	36	150	5.6302E-11	IPR002083
SUPERFAMILY	SSF49599	TRAF domain-like	34	156	2.94E-12	-
MobiDBLite	mobidb-lite	consensus disorder prediction	170	189	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10523 (speckle-type POZ protein)

Pathway:

ko04340 (Hedgehog signaling pathway) map04340 (Hedgehog signaling pathway) ko04341 (Hedgehog signaling pathway - fly) map04341 (Hedgehog signaling pathway - fly)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_025822267.1	BTB/POZ and MATH domain-containing protein 1-like [Panicum hallii]	3.13E-29
TrEMBL	A0A3L6PK87	BTB/POZ and MATH domain-containing protein 2-like OS=Panicum miliaceum OX=4540 GN=C2845_PM14G05540 PE=4 SV=1	2.35E-25

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	AH08.727, CH08.853
Poaceae	Eleusine coracana subsp. coracana	5	gene-QOZ80_8AG0622660, gene-QOZ80_8AG0623230 ... gene-QOZ80_8BG0650730, gene-QOZ80_8BG0650740, gene-QOZ80_8BG0650750