Basic Information
Locus ID:
AH08.700
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 9118630 | 9122573 | + | AH08.700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 44,910.00 Da | 55.13 | 66.63 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 35 | 169 | 9.63748E-22 | IPR002083 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 34 | 172 | 1.5E-22 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 34 | 172 | 5.0E-22 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 34 | 169 | 16.581085 | IPR002083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 383 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 243 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21010.1 | BTB-POZ and MATH domain 5. | 3.57E-19 |
| RefSeq | XP_021321498.1 | BTB/POZ and MATH domain-containing protein 2 [Sorghum bicolor] | 2.32E-33 |
| Q1EBV6 | BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=BPM5 PE=1 SV=1 | 3.53E-18 | |
| TrEMBL | A0A5J9W417 | MATH domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_09096 PE=4 SV=1 | 8.02E-42 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH08.700, BH08.747, CH08.832, CH09.1648 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0622370, gene-QOZ80_8BG0650660 |