Basic Information
Locus ID:
AH08.70
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 664559 | 667692 | - | AH08.70 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 60,392.68 Da | 48.77 | 70.95 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02667 | Peptidase_C19K | 170 | 545 | 3.27292E-56 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 170 | 544 | 2.0E-33 | IPR001394 |
| SUPERFAMILY | SSF57850 | RING/U-box | 69 | 149 | 1.5E-6 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 168 | 546 | 7.46E-64 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 168 | 549 | 1.1E-64 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 167 | 4.7E-6 | IPR013083 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 75 | 153 | 10.920794 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 169 | 547 | 34.538467 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 170 | 185 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 478 | 496 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 390 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 367 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 422 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32780.1 | ubiquitin-specific protease 1. | 3.83E-18 |
| RefSeq | XP_039847200.1 | ubiquitin carboxyl-terminal hydrolase 2-like [Panicum virgatum] | 2.28E-213 |
| Q9FPT5 | Ubiquitin carboxyl-terminal hydrolase 1 OS=Arabidopsis thaliana OX=3702 GN=UBP1 PE=1 SV=2 | 3.8E-17 | |
| TrEMBL | A0A835AQ63 | Ubiquitin carboxyl-terminal hydrolase OS=Digitaria exilis OX=1010633 GN=HU200_052244 PE=3 SV=1 | 1.54E-222 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology