Basic Information
Locus ID:
AH08.592
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 7051970 | 7058810 | - | AH08.592 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 58,509.09 Da | 46.60 | 89.58 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 46 | 80 | 6.3E-7 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 195 | 211 | 1.7 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 171 | 193 | 0.061 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 147 | 430 | 1.49E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 43 | 86 | 4.97E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 128 | 243 | 3.7E-9 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 39 | 89 | 1.5E-6 | - |
| SMART | SM00256 | fbox_2 | 49 | 88 | 0.0044 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 43 | 79 | 9.179537 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38390.1 | F-box/RNI-like superfamily protein. | 7.63E-10 |
| RefSeq | XP_002445197.1 | uncharacterized protein LOC8071159 isoform X2 [Sorghum bicolor] | 1.2E-239 |
| Q9FF23 | Putative F-box protein At5g38390 OS=Arabidopsis thaliana OX=3702 GN=At5g38390 PE=4 SV=1 | 7.57E-9 | |
| TrEMBL | A0A5J9SBV9 | F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_58050 PE=4 SV=1 | 3.08E-250 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology