Basic Information
Locus ID:
AH08.591
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 7043779 | 7047869 | - | AH08.591 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 83,016.45 Da | 45.51 | 82.65 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 326 | 389 | 1.8E-7 | IPR008906 |
| SUPERFAMILY | SSF52047 | RNI-like | 153 | 223 | 3.14E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 67 | 1.83E-9 | IPR036047 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 321 | 387 | 1.9E-7 | IPR012337 |
| Gene3D | G3DSA:1.20.1280.50 | - | 21 | 82 | 9.8E-7 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 105 | 224 | 4.5E-6 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 22 | 58 | 9.02057 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 470 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29765.1 | General transcription factor 2-related zinc finger protein. | 8.34E-25 |
| RefSeq | XP_034599059.1 | uncharacterized protein LOC117859964 isoform X1 [Setaria viridis] | 8.69E-245 |
| Q9C8Y8 | Putative F-box/FBD/LRR-repeat protein At1g66290 OS=Arabidopsis thaliana OX=3702 GN=At1g66290 PE=4 SV=1 | 2.6E-6 | |
| TrEMBL | A0A4U6U493 | F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_6G029400v2 PE=4 SV=1 | 1.97E-243 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology