Basic Information
Locus ID:
AH08.586
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 6969068 | 6971873 | + | AH08.586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 65,225.35 Da | 41.07 | 86.76 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 78 | 115 | 5.6E-6 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 71 | 126 | 1.24E-12 | IPR036047 |
| SUPERFAMILY | SSF52058 | L domain-like | 196 | 485 | 2.18E-8 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 138 | 291 | 6.2E-7 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 74 | 134 | 6.8E-8 | - |
| SMART | SM00256 | fbox_2 | 81 | 120 | 4.9E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 75 | 111 | 9.603447 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38392.1 | - | 6.35E-12 |
| RefSeq | XP_039853295.1 | uncharacterized protein LOC120711732 [Panicum virgatum] | 5.46E-295 |
| Q9FNK0 | Putative F-box/FBD/LRR-repeat protein At5g22610 OS=Arabidopsis thaliana OX=3702 GN=At5g22610 PE=4 SV=1 | 7.61E-9 | |
| TrEMBL | A0A8T0RAK6 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG094800 PE=4 SV=1 | 1.23E-293 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology