Basic Information
Locus ID:
AH08.563
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 6405366 | 6406334 | + | AH08.563 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.02 | 32,062.93 Da | 52.77 | 97.85 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 23 | 69 | 3.0E-12 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 109 | 265 | 3.73E-11 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 70 | 1.27E-10 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 17 | 69 | 2.2E-12 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 95 | 266 | 2.8E-12 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 20 | 68 | 10.239312 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G05490.1 | RNI-like superfamily protein. | 2.1E-19 |
| RefSeq | XP_039853260.1 | putative F-box/LRR-repeat protein 9 isoform X2 [Panicum virgatum] | 3.67E-151 |
| Q9M0U6 | Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana OX=3702 GN=FBL22 PE=4 SV=1 | 2.07E-18 | |
| TrEMBL | A0A8T0RAR1 | F-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG095400 PE=4 SV=1 | 8.31E-150 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH08.560, AH08.563, BH08.599, BH08.609, BH08.611, CH06.2084 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0620410, gene-QOZ80_8BG0648220 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G076300, gene-BS78_07G093000 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr20G010490 |
| Poaceae | Zea mays | 2 | Zm00001eb386430_P003, Zm00001eb386440_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23738 |