halophFGD

Basic Information

Locus ID: AH08.543

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Belongs to the ATG8 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
AH08	6064633	6066600	+	AH08.543

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.54	19,026.82 Da	47.53	92.32	-0.19

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16128	Ubl_ATG8	61	163	3.22443E-75	-
Pfam	PF02991	Autophagy protein Atg8 ubiquitin like	63	166	7.3E-52	IPR004241
SUPERFAMILY	SSF54236	Ubiquitin-like	60	166	1.47E-40	IPR029071
Gene3D	G3DSA:3.10.20.90	-	56	167	4.1E-57	-

KEGG Pathway

KO Term:

K08341 (GABA(A) receptor-associated protein)

Pathway:

ko04068 (FoxO signaling pathway) map04068 (FoxO signaling pathway) ko04136 (Autophagy - other) map04136 (Autophagy - other) ko04137 (Mitophagy - animal) map04137 (Mitophagy - animal) ko04138 (Autophagy - yeast) map04138 (Autophagy - yeast) ko04139 (Mitophagy - yeast) map04139 (Mitophagy - yeast) ko04140 (Autophagy - animal) map04140 (Autophagy - animal) ko04212 (Longevity regulating pathway - worm) map04212 (Longevity regulating pathway - worm) ko04371 (Apelin signaling pathway) map04371 (Apelin signaling pathway) map04621 (NOD-like receptor signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT1G62040.1	Ubiquitin-like superfamily protein.	4.56E-66
RefSeq	XP_008661528.1	uncharacterized protein LOC100240697 isoform X2 [Zea mays]	3.99E-69
Swiss-Prot	A2YS06	Autophagy-related protein 8C OS=Oryza sativa subsp. indica OX=39946 GN=ATG8C PE=3 SV=2	3.01E-70
TrEMBL	A0A1D6DYR7	Autophagy-related protein OS=Zea mays OX=4577 GN=ZEAMMB73_Zm00001d002257 PE=3 SV=1	2.22E-68

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

No orthogroup found for AH08.543.