Basic Information
Locus ID:
AH08.509
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
protein Sb04g004280 source
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 5691310 | 5692887 | - | AH08.509 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 44,988.71 Da | 43.62 | 83.10 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 3 | 39 | 4.1E-9 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 50 | 120 | 8.1E-22 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 130 | 197 | 2.1E-20 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 230 | 274 | 3.0E-9 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 125 | 198 | 3.11E-20 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 43 | 2.05E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 199 | 274 | 2.87E-10 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 49 | 121 | 3.17E-22 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 45 | 126 | 8.6E-29 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 43 | 4.7E-17 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 127 | 198 | 2.0E-27 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 199 | 278 | 1.9E-13 | - |
| SMART | SM00213 | ubq_7 | 48 | 119 | 7.9E-20 | IPR000626 |
| SMART | SM00213 | ubq_7 | 131 | 200 | 8.9E-16 | IPR000626 |
| SMART | SM00213 | ubq_7 | 1 | 47 | 4.1 | IPR000626 |
| SMART | SM00213 | ubq_7 | 205 | 279 | 0.09 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 125 | 197 | 21.262886 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 43 | 11.442183 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 48 | 123 | 19.411978 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 205 | 274 | 13.293092 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 155 | 180 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 58 | 78 | 7.9E-20 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 79 | 99 | 7.9E-20 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 100 | 121 | 7.9E-20 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 272 | 321 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 1.25E-65 |
| RefSeq | XP_047080467.1 | polyubiquitin 11-like isoform X2 [Lolium rigidum] | 1.31E-64 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 1.2E-64 | |
| TrEMBL | A0A8T0RAD1 | Polyubiquitin OS=Panicum virgatum OX=38727 GN=PVAP13_6KG092500 PE=4 SV=1 | 1.27E-90 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||