Basic Information
Locus ID:
AH08.42
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 467612 | 472077 | - | AH08.42 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 67,972.47 Da | 70.80 | 84.11 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 366 | 409 | 2.73825E-20 | - |
| CDD | cd02123 | PA_C_RZF_like | 159 | 296 | 2.33195E-50 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 366 | 409 | 9.0E-12 | IPR001841 |
| Pfam | PF02225 | PA domain | 209 | 275 | 9.5E-9 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 214 | 280 | 8.24E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 347 | 419 | 5.89E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 327 | 414 | 1.8E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 158 | 287 | 1.5E-26 | - |
| SMART | SM00184 | ring_2 | 367 | 408 | 2.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 367 | 409 | 12.282736 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 595 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 1.0E-134 |
| RefSeq | XP_034600069.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 2-like isoform X1 [Setaria viridis] | 0 |
| Q69U49 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RMR1 PE=2 SV=2 | 2.41E-228 | |
| TrEMBL | A0A4V6D4W7 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_6G005000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology