Basic Information
Locus ID:
AH08.230
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 2276670 | 2283545 | + | AH08.230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 68,282.20 Da | 48.39 | 82.57 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 224 | 516 | 3.0083E-51 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 479 | 516 | 2.2E-8 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 438 | 473 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 223 | 258 | 1.2E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 304 | 9.5E-5 | IPR001680 |
| Pfam | PF05162 | Ribosomal protein L41 | 583 | 607 | 2.6E-9 | IPR007836 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 218 | 516 | 2.54E-65 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 481 | 538 | 9.6E-12 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 215 | 480 | 6.6E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 348 | 388 | 44.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 304 | 3.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 390 | 428 | 46.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 259 | 1.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 474 | 1.3 | IPR001680 |
| SMART | SM00668 | ctlh | 54 | 111 | 0.0053 | IPR006595 |
| SMART | SM00320 | WD40_4 | 477 | 517 | 1.9E-11 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 484 | 526 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 54 | 111 | 9.158355 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 227 | 261 | 11.154684 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 313 | 15.287253 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 21 | 53 | 8.152704 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 272 | 309 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 227 | 268 | 13.716598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 484 | 516 | 11.998316 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 246 | 260 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 504 | 518 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 246 | 260 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 461 | 475 | 2.1E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 557 | 607 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 586 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 587 | 607 | - | - |
| Coils | Coil | Coil | 585 | 607 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 2.69E-237 |
| RefSeq | XP_025820751.1 | WD repeat-containing protein 26 homolog [Panicum hallii] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 2.58E-236 | |
| TrEMBL | A0A2T7D304 | WD repeat-containing protein 26 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G023500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology