Basic Information
Locus ID:
AH08.2287
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 39667536 | 39672675 | + | AH08.2287 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 45,330.80 Da | 41.06 | 68.36 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12420 | RRM_RBPMS_like | 184 | 266 | 1.07045E-34 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 186 | 256 | 3.5E-12 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 153 | 255 | 3.36E-14 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 180 | 270 | 1.2E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 185 | 266 | 1.4E-7 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 184 | 270 | 12.253338 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 66 | 88 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21320.2 | nucleotide binding;nucleic acid binding. | 7.81E-50 |
| RefSeq | XP_025821565.1 | RNA-binding protein 1-like [Panicum hallii] | 5.18E-131 |
| Q6JB11 | Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1 | 2.51E-67 | |
| TrEMBL | A0A835AE08 | RRM domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_062048 PE=4 SV=1 | 9.14E-132 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology