Basic Information
Locus ID:
AH08.227
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
C-terminal, D2-small domain, of ClpB protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 2242879 | 2257178 | - | AH08.227 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 214,092.38 Da | 47.46 | 79.34 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 1001 | 1250 | 3.23413E-52 | - |
| CDD | cd00009 | AAA | 488 | 636 | 1.36459E-19 | - |
| CDD | cd00009 | AAA | 207 | 309 | 2.21986E-8 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1011 | 1248 | 1.0E-41 | IPR000477 |
| Pfam | PF10431 | C-terminal, D2-small domain, of ClpB protein | 684 | 764 | 1.7E-20 | IPR019489 |
| Pfam | PF17871 | AAA lid domain | 311 | 414 | 1.1E-31 | IPR041546 |
| Pfam | PF07724 | AAA domain (Cdc48 subfamily) | 513 | 677 | 5.7E-48 | IPR003959 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 934 | 1316 | 8.15E-22 | IPR043502 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 207 | 416 | 4.72E-44 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 463 | 768 | 4.15E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 237 | 315 | 4.0E-29 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 467 | 682 | 9.5E-83 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 316 | 460 | 4.7E-44 | - |
| Gene3D | G3DSA:4.10.860.10 | UVR domain | 378 | 436 | 4.7E-44 | - |
| Gene3D | G3DSA:1.10.8.60 | - | 684 | 781 | 9.0E-23 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 184 | 236 | 3.5E-5 | IPR027417 |
| Gene3D | G3DSA:3.30.70.270 | - | 1046 | 1223 | 5.6E-8 | IPR043128 |
| SMART | SM01086 | ClpB_D2_small_2 | 684 | 775 | 7.0E-24 | IPR019489 |
| SMART | SM00382 | AAA_5 | 514 | 677 | 6.9E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 198 | 312 | 1.4 | IPR003593 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 988 | 1250 | 23.101923 | IPR000477 |
| ProSitePatterns | PS00870 | Chaperonins clpA/B signature 1. | 262 | 274 | - | IPR018368 |
| ProSitePatterns | PS00871 | Chaperonins clpA/B signature 2. | 548 | 566 | - | IPR028299 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 518 | 536 | 1.5E-36 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 592 | 610 | 1.5E-36 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 625 | 639 | 1.5E-36 | IPR001270 |
| PRINTS | PR00300 | ATP-dependent Clp protease ATP-binding subunit signature | 563 | 581 | 1.5E-36 | IPR001270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1772 | 1786 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1490 | 1537 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1839 | 1872 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1602 | 1622 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1841 | 1860 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1772 | 1798 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1513 | 1531 | - | - |
| Coils | Coil | Coil | 368 | 402 | - | - |
| Coils | Coil | Coil | 827 | 847 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50920.1 | CLPC homologue 1. Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery. | 1.58E-239 |
| RefSeq | XP_004972949.2 | chaperone protein ClpC4, chloroplastic [Setaria italica] | 0 |
| Q53N47 | Chaperone protein ClpC4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=CPLC4 PE=3 SV=1 | 3.49E-251 | |
| TrEMBL | A0A368RJI3 | UVR domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G076400v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |