Basic Information
Locus ID:
AH08.2254
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Large proline-rich protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 39229428 | 39240566 | + | AH08.2254 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 150,634.47 Da | 57.53 | 76.60 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17039 | Ubl_ubiquitin_like | 517 | 584 | 5.85498E-21 | - |
| Pfam | PF13242 | HAD-hyrolase-like | 234 | 288 | 9.5E-13 | - |
| Pfam | PF00240 | Ubiquitin family | 517 | 586 | 4.0E-20 | IPR000626 |
| Pfam | PF13344 | Haloacid dehalogenase-like hydrolase | 44 | 132 | 2.0E-13 | IPR006357 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 498 | 585 | 5.76E-24 | IPR029071 |
| SUPERFAMILY | SSF56784 | HAD-like | 42 | 289 | 2.32E-36 | IPR036412 |
| Gene3D | G3DSA:3.40.50.1000 | - | 44 | 317 | 6.1E-42 | IPR023214 |
| Gene3D | G3DSA:3.40.50.1000 | - | 120 | 234 | 6.1E-42 | IPR023214 |
| Gene3D | G3DSA:3.10.20.90 | - | 506 | 599 | 1.1E-23 | - |
| SMART | SM00213 | ubq_7 | 515 | 586 | 2.0E-21 | IPR000626 |
| TIGRFAM | TIGR01459 | HAD-SF-IIA-hyp4: HAD hydrolase, TIGR01459 family | 43 | 281 | 7.3E-45 | IPR006356 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 515 | 590 | 22.656513 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 541 | 566 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 546 | 566 | 9.9E-7 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 567 | 588 | 9.9E-7 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 973 | 993 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 890 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 737 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1157 | 1179 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1121 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1194 | 1222 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10460.1 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein. | 6.54E-124 |
| RefSeq | XP_039854966.1 | ubiquitin-like domain-containing protein CIP73 [Panicum virgatum] | 0 |
| D5LXJ0 | Ubiquitin-like domain-containing protein CIP73 OS=Lotus japonicus OX=34305 GN=CIP73 PE=1 SV=1 | 1.38E-44 | |
| TrEMBL | A0A835A9P7 | Ubiquitin-like domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_062017 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg11686 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_8683 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah035970 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g217800 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg10192, Sbi_jg39933, Sbi_jg55268 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg14402, Seu_jg222 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00014171 |
| Amaranthaceae | Suaeda glauca | 6 | Sgl12070, Sgl12071, Sgl12266, Sgl17365, Sgl17366, Sgl17496 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000019745, gene:ENSEOMG00000032958 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0022380, CQ.Regalona.r1.1BG0001890 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30048680, pistato.v30282420 |
| Apiaceae | Apium graveolens | 1 | Ag3G02556 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G000450 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103705892 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.291.V1.1 |
| Asteraceae | Flaveria trinervia | 3 | Ftri13G01361, Ftri16G04901, Ftri2G05859 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G42220.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10003631m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g08390.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g018400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0796 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0881 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno05g14500, gene.Cymno13g04240 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g07660 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-1395, nbisL1-mrna-1757 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.125 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00017370, Pov_00020558 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb1G02836 |
| Poaceae | Echinochloa crus-galli | 2 | AH08.2254, BH08.2388 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0639330, gene-QOZ80_8BG0667960 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0541060.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_019226 |
| Poaceae | Oryza coarctata | 2 | Oco13G007900, Oco14G008410 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g31540.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G213300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0200736, Pt_Chr0204747 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G018490, Chr17G017610, Chr20G002490, Chr29G000970 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G050200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC4BG021580, gene_TRIDC6AG001500 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS6A02G013700.2, TraesCS6A02G013800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198450_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17574 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24469 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.541, evm.TU.LG12.1181 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g30320 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.1334 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-9124 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21159 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-15315 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000018l.456 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00003017 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3294 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11179 |
| Salicaceae | Populus euphratica | 3 | populus_peu15439, populus_peu15440, populus_peu33080 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132628175 |
| Solanaceae | Solanum chilense | 1 | SOLCI002187400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017836 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1865 |
| Tamaricaceae | Tamarix chinensis | 2 | TC04G2490, TC09G1118 |
| Zosteraceae | Zostera marina | 2 | Zosma03g06660.v3.1, Zosma05g28000.v3.1 |