Basic Information
Locus ID:
AH08.2242
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
CPK24
Description:
EF-hand domain pair
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 39158210 | 39159914 | - | AH08.2242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 52,241.62 Da | 37.76 | 83.59 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05117 | STKc_CAMK | 42 | 249 | 4.1764E-97 | - |
| CDD | cd00051 | EFh | 297 | 355 | 3.15994E-14 | IPR002048 |
| CDD | cd00051 | EFh | 369 | 426 | 3.04676E-11 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 300 | 356 | 3.1E-10 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 368 | 425 | 2.4E-10 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 39 | 250 | 2.0E-48 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 262 | 5.13E-58 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 274 | 438 | 4.4E-40 | IPR011992 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 49 | 258 | 5.0E-57 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 259 | 428 | 3.1E-47 | - |
| SMART | SM00054 | efh_1 | 333 | 361 | 0.91 | IPR002048 |
| SMART | SM00054 | efh_1 | 369 | 397 | 0.76 | IPR002048 |
| SMART | SM00054 | efh_1 | 297 | 325 | 0.58 | IPR002048 |
| SMART | SM00054 | efh_1 | 400 | 428 | 1.3E-4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 1 | 250 | 2.1E-44 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 329 | 364 | 9.380651 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 365 | 392 | 10.105932 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 250 | 36.908833 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 293 | 328 | 13.676544 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 396 | 431 | 13.09074 | IPR002048 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 88 | 100 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 342 | 354 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 306 | 318 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 409 | 421 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57530.1 | calcium-dependent protein kinase 32. Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro | 1.74E-172 |
| RefSeq | XP_039854959.1 | calcium-dependent protein kinase 21-like [Panicum virgatum] | 2.18E-259 |
| Q6ZIU9 | Calcium-dependent protein kinase 21 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK21 PE=2 SV=1 | 3.13E-244 | |
| TrEMBL | A0A1E5W1Y9 | Calcium-dependent protein kinase 32 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0007554 PE=4 SV=1 | 1.73E-260 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH08.2242, BH08.2372, CH08.2548 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0638190, gene-QOZ80_8BG0667730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0686030.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_030419, gene-QYE76_061945 |
| Poaceae | Oryza coarctata | 2 | Oco15G013700, Oco16G012880 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g42750.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G210600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403526 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G002420, Chr29G001060 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G466300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG034960, gene_TRIDC7BG026070 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G267000.1, TraesCS7B02G165200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb198360_P004 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-17565 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24464 |