Basic Information
Locus ID:
AH08.2241
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 39151661 | 39157335 | + | AH08.2241 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.93 | 67,301.47 Da | 52.17 | 59.55 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 214 | 275 | 1.8E-13 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 292 | 340 | 5.6E-10 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 294 | 342 | 8.01E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 141 | 223 | 2.98E-18 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 214 | 282 | 1.54E-12 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 569 | 596 | 1.26E-5 | IPR036443 |
| Gene3D | G3DSA:2.30.30.380 | - | 565 | 597 | 4.2E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 139 | 229 | 5.6E-17 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 271 | 535 | 1.6E-87 | - |
| SMART | SM00647 | ibrneu5 | 214 | 275 | 5.3E-21 | IPR002867 |
| SMART | SM00547 | zf_4 | 571 | 595 | 5.7E-6 | IPR001876 |
| SMART | SM00647 | ibrneu5 | 288 | 349 | 0.054 | IPR002867 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 141 | 353 | 49.056496 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 145 | 191 | 9.066582 | IPR001841 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 569 | 597 | 8.625751 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 573 | 592 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 539 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 560 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 37 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 5.9E-243 |
| RefSeq | XP_025820234.1 | probable E3 ubiquitin-protein ligase ARI8 [Panicum hallii] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 5.66E-242 | |
| TrEMBL | A0A2S3I4E1 | RBR-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_6G288000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology