Basic Information
Locus ID:
AH08.2233
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ribonuclease H protein At1g65750
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 39097285 | 39103296 | + | AH08.2233 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.74 | 116,646.77 Da | 47.61 | 81.07 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17830 | STI1 domain | 859 | 905 | 3.3E-9 | IPR041243 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 350 | 434 | 6.5E-22 | IPR026960 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 940 | 1027 | 8.1E-14 | IPR020683 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 931 | 1050 | 3.58E-31 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 1002 | 1053 | 7.0E-17 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 926 | 1001 | 1.0E-17 | IPR036770 |
| SMART | SM00248 | ANK_2a | 997 | 1026 | 8.9E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 931 | 960 | 370.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 964 | 993 | 0.11 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 964 | 996 | 10.842607 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 997 | 1028 | 11.479361 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 997 | 1029 | 12.84968 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 964 | 996 | 12.20864 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 634 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 720 | 751 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 707 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 963 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 572 | 637 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35450.4 | ankyrin repeat-containing protein 2. Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes. | 1.6E-46 |
| RefSeq | XP_015619298.1 | uncharacterized protein LOC107279689 [Oryza sativa Japonica Group] | 2.61E-133 |
| Q9SAR5 | Ankyrin repeat domain-containing protein 2A OS=Arabidopsis thaliana OX=3702 GN=AKR2A PE=1 SV=2 | 4.19E-45 | |
| TrEMBL | A0A8T0NRT0 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9KG377066 PE=4 SV=1 | 1.5E-155 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology