Basic Information
Locus ID:
AH08.2153
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UBP2
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 38311581 | 38326884 | - | AH08.2153 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 88,727.44 Da | 50.66 | 81.16 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02148 | Zn-finger in ubiquitin-hydrolases and other protein | 100 | 156 | 3.5E-6 | IPR001607 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 242 | 794 | 6.0E-41 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 241 | 796 | 3.14E-63 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 53 | 156 | 1.29E-9 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 236 | 798 | 1.0E-59 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 169 | 1.1E-10 | IPR013083 |
| ProSiteProfiles | PS50271 | Zinc finger UBP-type profile. | 77 | 158 | 11.804708 | IPR001607 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 241 | 797 | 36.255116 | IPR028889 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 727 | 746 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 242 | 257 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 577 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 616 | 638 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04860.1 | ubiquitin-specific protease 2. Encodes a ubiquitin-specific protease. | 6.25E-33 |
| RefSeq | XP_034600573.1 | ubiquitin carboxyl-terminal hydrolase 1-like [Setaria viridis] | 0 |
| Q8W4N3 | Ubiquitin carboxyl-terminal hydrolase 2 OS=Arabidopsis thaliana OX=3702 GN=UBP2 PE=1 SV=2 | 6.21E-32 | |
| TrEMBL | A0A368RPJ6 | Ubiquitin carboxyl-terminal hydrolase OS=Setaria italica OX=4555 GN=SETIT_6G220300v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology