Basic Information
Locus ID:
AH08.2152
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 38302896 | 38304197 | - | AH08.2152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 44,799.81 Da | 56.52 | 81.34 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 385 | 422 | 8.95361E-11 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 384 | 428 | 1.0E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 384 | 429 | 8.39E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 382 | 432 | 3.7E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 385 | 422 | 1.1E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 385 | 423 | 11.751628 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 400 | 409 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 293 | 324 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 62 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 96 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 297 | 315 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22250.1 | RING/U-box superfamily protein. | 1.6E-21 |
| RefSeq | XP_039854814.1 | predicted GPI-anchored protein 58 [Panicum virgatum] | 4.13E-73 |
| TrEMBL | A0A8T0RIE0 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_6KG376600 PE=4 SV=1 | 9.34E-72 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology