Basic Information
Locus ID:
AH08.211
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 2116278 | 2119725 | - | AH08.211 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.00 | 33,258.03 Da | 40.80 | 90.17 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 222 | 290 | 1.0E-23 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 150 | 214 | 5.4E-17 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 104 | 137 | 7.4E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 99 | 140 | 7.83E-8 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 215 | 292 | 2.75E-26 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 141 | 214 | 8.06E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 216 | 295 | 6.8E-32 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 140 | 215 | 7.0E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 85 | 139 | 7.8E-9 | - |
| SMART | SM00213 | ubq_7 | 141 | 213 | 3.0E-13 | IPR000626 |
| SMART | SM00213 | ubq_7 | 82 | 140 | 13.0 | IPR000626 |
| SMART | SM00213 | ubq_7 | 220 | 291 | 4.2E-24 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 220 | 290 | 22.112127 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 141 | 212 | 15.819037 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 111 | 137 | 10.179209 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 272 | 293 | 9.3E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 251 | 271 | 9.3E-23 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 230 | 250 | 9.3E-23 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 14 | 34 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G02890.1 | Ubiquitin family protein. Polyubiquitin gene containing 4 ubiquitin repeats. | 1.11E-61 |
| RefSeq | XP_022683374.1 | polyubiquitin [Setaria italica] | 3.62E-93 |
| P0CH33 | Polyubiquitin 11 OS=Arabidopsis thaliana OX=3702 GN=UBQ11 PE=2 SV=1 | 1.07E-60 | |
| TrEMBL | K3YLY7 | Ubiquitin-like domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_6G079100v2 PE=4 SV=1 | 8.18E-92 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for AH08.211.