Basic Information
Locus ID:
AH08.2089
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 37715107 | 37719758 | + | AH08.2089 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 57,824.70 Da | 53.95 | 66.65 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 365 | 439 | 7.35828E-32 | - |
| CDD | cd12352 | RRM1_TIA1_like | 158 | 228 | 4.25441E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 242 | 316 | 7.57052E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 158 | 224 | 1.4E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 367 | 433 | 5.1E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 243 | 313 | 2.0E-17 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 154 | 322 | 5.14E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 357 | 445 | 4.75E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 340 | 443 | 1.5E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 90 | 240 | 7.2E-26 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 241 | 327 | 1.7E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 366 | 435 | 4.5E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 242 | 315 | 1.6E-22 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 157 | 226 | 4.6E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 365 | 439 | 15.76675 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 156 | 230 | 15.425642 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 241 | 319 | 16.773018 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 362 | - | - |
| Coils | Coil | Coil | 94 | 114 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 3.37E-161 |
| RefSeq | XP_025820398.1 | oligouridylate-binding protein 1B-like [Panicum hallii] | 3.12E-282 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 2.38E-268 | |
| TrEMBL | A0A835A262 | Oligouridylate-binding protein 1-like OS=Digitaria exilis OX=1010633 GN=HU200_065738 PE=4 SV=1 | 2.16E-281 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology