Basic Information
Locus ID:
AH08.1994
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 36836393 | 36841001 | + | AH08.1994 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 83,811.35 Da | 38.97 | 92.60 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 60 | 358 | 1.37094E-177 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 375 | 677 | 3.74303E-153 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 380 | 673 | 9.4E-33 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 374 | 678 | 2.12E-48 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 59 | 358 | 4.97E-45 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 373 | 678 | 2.7E-46 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 59 | 359 | 1.2E-38 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 375 | 678 | 28.905184 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 60 | 359 | 31.7391 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 740 | 758 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 739 | 758 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55480.1 | SHV3-like 1. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 4.42E-230 |
| RefSeq | XP_034599849.1 | glycerophosphodiester phosphodiesterase GDPDL3-like isoform X2 [Setaria viridis] | 0 |
| Q9FJ62 | Glycerophosphodiester phosphodiesterase GDPDL4 OS=Arabidopsis thaliana OX=3702 GN=GDPDL4 PE=1 SV=1 | 4.25E-229 | |
| TrEMBL | A0A4U6U9Q7 | glycerophosphodiester phosphodiesterase OS=Setaria viridis OX=4556 GN=SEVIR_6G209900v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology