Basic Information
Locus ID:
AH08.1839
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 35309864 | 35317207 | - | AH08.1839 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 104,070.34 Da | 55.25 | 65.96 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 442 | 745 | 3.2E-45 | IPR001394 |
| Pfam | PF01753 | MYND finger | 115 | 152 | 7.3E-10 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 438 | 750 | 3.14E-84 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 112 | 154 | 7.67E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 435 | 759 | 3.2E-89 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 103 | 156 | 4.7E-12 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 442 | 748 | 50.431767 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 115 | 152 | 11.602668 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 115 | 152 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 443 | 458 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 284 | 314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 397 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 816 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 174 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 823 | 862 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 913 | 946 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 885 | 901 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 762 | 798 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 6.14E-153 |
| RefSeq | XP_025820753.1 | ubiquitin carboxyl-terminal hydrolase 17 [Panicum hallii] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 5.93E-152 | |
| TrEMBL | A0A2T7D8H1 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G228100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology