Basic Information
Locus ID:
AH08.1836
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Uncharacterized protein family UPF0029
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 35294610 | 35296811 | - | AH08.1836 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 23,180.46 Da | 56.23 | 78.34 | -0.04 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38090.2 | Ribosomal protein S5 domain 2-like superfamily protein. | 5.41E-69 |
| RefSeq | XP_034599767.1 | IMPACT family member in pol 5'region isoform X1 [Setaria viridis] | 1.03E-115 |
| P32438 | IMPACT family member in pol 5'region (Fragment) OS=Thermus thermophilus OX=274 PE=3 SV=1 | 4.07E-39 | |
| TrEMBL | A0A2T7D8G9 | UPF0029 domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_6G227800 PE=3 SV=1 | 2.54E-116 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg20050, jg6798 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_16883 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah027180 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g133590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg12554, Sbi_jg12555, Sbi_jg12556, Sbi_jg53384 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg8536, Seu_jg8547 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010463 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33702, Sgl39013 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003016, gene:ENSEOMG00000003384 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6AG0022800 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30203690 |
| Apiaceae | Apium graveolens | 1 | Ag4G02513 |
| Arecaceae | Cocos nucifera | 1 | COCNU_05G005090 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103695633, gene-LOC120107559 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2324.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G15936 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G38090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10026114m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp7g10120.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB05g006010.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G0068 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G0063 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno04g09430 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0693s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g16540 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.2710 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb5G27908 |
| Poaceae | Echinochloa crus-galli | 3 | AH08.1836, BH08.1916, CH08.2101 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0634520, gene-QOZ80_8BG0663470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0197890.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_031113 |
| Poaceae | Oryza coarctata | 2 | Oco15G012620, Oco16G009980 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g37310.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G167000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0403279 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr16G015870, Chr17G015280 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G796300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG066760, gene_TRIDC2BG071910 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G472000.1, TraesCS2B02G494700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb038350_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-47693 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g23141 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.1458, evm.TU.LG12.125 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g22510 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1707 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-17462 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16442 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-12062 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000011l.1036 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00007107 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-15391 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-3382 |
| Salicaceae | Populus euphratica | 1 | populus_peu23719 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132614847 |
| Solanaceae | Solanum chilense | 1 | SOLCI006242200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003375 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_3478 |
| Tamaricaceae | Tamarix chinensis | 1 | TC11G0681 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29400.v3.1 |