Basic Information
Locus ID:
AH08.1616
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 32853747 | 32864428 | + | AH08.1616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 41,206.49 Da | 41.76 | 87.87 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 4.86913E-31 | - |
| Pfam | PF00627 | UBA/TS-N domain | 156 | 193 | 5.2E-11 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 340 | 376 | 7.2E-11 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 2.8E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 259 | 314 | 3.4E-19 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 255 | 321 | 6.15E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 154 | 201 | 1.84E-10 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 329 | 383 | 2.21E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 4.37E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.10.540 | - | 249 | 314 | 2.6E-22 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 149 | 198 | 7.4E-19 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 332 | 381 | 9.0E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 77 | 1.2E-24 | - |
| SMART | SM00727 | CBM | 255 | 300 | 6.5E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.0E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 341 | 378 | 1.1E-7 | IPR015940 |
| SMART | SM00165 | uba_6 | 156 | 195 | 0.052 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 383 | 1.4E-103 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 157 | 196 | 11.486622 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.237774 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 338 | 379 | 14.354177 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 351 | 8.6E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 352 | 366 | 8.6E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 367 | 382 | 8.6E-29 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 285 | 307 | 8.6E-29 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 232 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 2.18E-119 |
| RefSeq | XP_039816278.1 | probable ubiquitin receptor RAD23 [Panicum virgatum] | 2.27E-192 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 1.65E-139 | |
| TrEMBL | A0A8T0QZT1 | Ubiquitin receptor RAD23 OS=Panicum virgatum OX=38727 GN=PVAP13_6NG135400 PE=3 SV=1 | 5.13E-191 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology