Basic Information
Locus ID:
AH08.1596
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Leucine rich repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 32526030 | 32528098 | - | AH08.1596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 68,818.28 Da | 47.92 | 99.13 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 362 | 631 | 3.3E-23 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 130 | 188 | 1.3E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 42 | 77 | 3.4E-6 | IPR013210 |
| SUPERFAMILY | SSF52058 | L domain-like | 42 | 224 | 4.81E-31 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 362 | 632 | 1.01E-42 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 353 | 433 | 5.0E-15 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 43 | 150 | 2.0E-22 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 151 | 242 | 8.0E-12 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 435 | 653 | 5.2E-34 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 358 | 638 | 25.502695 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48480.1 | receptor-like kinase 1. Arabidopsis thaliana receptor-like protein kinase (RKL1) gene | 2.89E-96 |
| RefSeq | XP_034601289.1 | probable inactive receptor kinase RLK902 [Setaria viridis] | 3.45E-273 |
| Q9LP77 | Probable inactive receptor kinase At1g48480 OS=Arabidopsis thaliana OX=3702 GN=RKL1 PE=1 SV=1 | 2.81E-95 | |
| TrEMBL | A0A4U6U454 | Protein kinase domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_6G159200v2 PE=4 SV=1 | 9.58E-276 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology