Basic Information
Locus ID:
AH08.1320
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 26884606 | 26887430 | - | AH08.1320 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.33 | 34,529.38 Da | 68.61 | 83.04 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 258 | 302 | 1.6E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 257 | 308 | 3.79E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 306 | 2.0E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 258 | 301 | 0.0056 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 258 | 302 | 10.866448 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 135 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_014755621.1 | RING-H2 finger protein ATL8 [Brachypodium distachyon] | 2.49E-12 |
| TrEMBL | A0A3L6RI82 | RING-type domain-containing protein OS=Panicum miliaceum OX=4540 GN=C2845_PM13G11860 PE=4 SV=1 | 5.31E-15 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH08.1320, CH08.1603 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g31720.1 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2AG025530 |
| Poaceae | Triticum aestivum | 1 | TraesCS2A02G198300.1 |