Basic Information
Locus ID:
AH08.1207
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 24059151 | 24068059 | - | AH08.1207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.01 | 87,192.44 Da | 54.97 | 80.64 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 32 | 65 | 3.7E-6 | IPR001810 |
| Pfam | PF00889 | Elongation factor TS | 739 | 807 | 1.5E-12 | IPR014039 |
| SUPERFAMILY | SSF54713 | Elongation factor Ts (EF-Ts), dimerisation domain | 735 | 810 | 8.24E-16 | IPR036402 |
| SUPERFAMILY | SSF81383 | F-box domain | 27 | 79 | 1.44E-9 | IPR036047 |
| Gene3D | G3DSA:3.30.479.20 | Elongation factor Ts, dimerisation domain | 736 | 811 | 4.0E-9 | IPR036402 |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 64 | 3.3E-6 | - |
| Hamap | MF_00050 | Elongation factor Ts [tsf]. | 729 | 811 | 11.735476 | IPR001816 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 642 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 679 | 696 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 533 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 611 | 628 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11120.1 | translation elongation factor Ts (EF-Ts), putative. | 5.21E-22 |
| RefSeq | XP_052134862.1 | uncharacterized protein LOC127753413 [Oryza glaberrima] | 3.35E-140 |
| B4FHF0 | Elongation factor Ts, mitochondrial OS=Zea mays OX=4577 GN=EFTS PE=2 SV=1 | 3.65E-30 | |
| TrEMBL | A0A835B2X3 | F-box domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_047673 PE=4 SV=1 | 7.17E-200 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH08.1207, BH07.3679, BH08.1175, CH07.3752, CH08.1300 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0469780.1 |
| Poaceae | Oryza coarctata | 2 | Oco18G000850, Oco19G001450 |
| Poaceae | Oryza sativa | 3 | LOC_Os06g16730.1, LOC_Os10g10390.1, LOC_Os10g10410.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G059500, gene-BS78_07G060200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0705290 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G282900 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC5AG027470 |
| Poaceae | Triticum aestivum | 1 | TraesCS5A02G166500.1.cds1 |