Basic Information
Locus ID:
AH08.1010
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH08 | 16980921 | 16997234 | - | AH08.1010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.42 | 349,682.72 Da | 56.38 | 72.71 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13963 | Transposase-associated domain | 314 | 387 | 6.6E-18 | IPR029480 |
| Pfam | PF02992 | Transposase family tnp2 | 626 | 839 | 5.2E-91 | IPR004242 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 1023 | 1129 | 9.4E-38 | IPR025452 |
| Pfam | PF02469 | Fasciclin domain | 198 | 264 | 2.3E-6 | IPR000782 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 1283 | 1348 | 1.3E-12 | IPR025312 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 181 | 264 | 5.76E-10 | IPR036378 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2458 | 2552 | 5.1E-7 | IPR038765 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 29 | 172 | 4.19E-14 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 24 | 159 | 6.0E-6 | IPR036378 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 23 | 172 | 9.326416 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 425 | 445 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3105 | 3124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3105 | 3140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2218 | 2247 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2199 | 2318 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1572 | 1620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1537 | 1552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1689 | 1719 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2831 | 2923 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2046 | 2069 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1487 | 1503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2712 | 2763 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1481 | 1552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2345 | 2380 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1350 | 1371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2266 | 2314 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2862 | 2880 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1689 | 1710 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1586 | 1603 | - | - |
| Coils | Coil | Coil | 2004 | 2031 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12730.1 | FASCICLIN-like arabinogalactan 2. AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds | 5.09E-59 |
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| Q9SU13 | Fasciclin-like arabinogalactan protein 2 OS=Arabidopsis thaliana OX=3702 GN=FLA2 PE=2 SV=1 | 4.93E-58 | |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |