Basic Information
Locus ID:
AH07.910
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 9538670 | 9539440 | + | AH07.910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 26,830.98 Da | 53.70 | 92.54 | 0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 196 | 241 | 8.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 196 | 246 | 1.61E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 245 | 9.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 197 | 240 | 1.1E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 197 | 241 | 12.149959 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42200.1 | RING/U-box superfamily protein. | 3.05E-8 |
| RefSeq | XP_004954625.1 | E3 ubiquitin-protein ligase Os06g0535400 [Setaria italica] | 2.68E-73 |
| Q8L9W3 | E3 ubiquitin-protein ligase ATL23 OS=Arabidopsis thaliana OX=3702 GN=ATL23 PE=1 SV=2 | 2.99E-7 | |
| TrEMBL | A0A368PGL5 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_1G029500v2 PE=4 SV=1 | 6.06E-72 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH07.910, CH07.793 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G093700 |
| Poaceae | Zea mays | 1 | Zm00001eb239580_P001 |