Basic Information
Locus ID:
AH07.880
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 9112610 | 9115565 | + | AH07.880 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.65 | 75,656.06 Da | 48.02 | 84.11 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 561 | 669 | 5.5E-16 | IPR011545 |
| Pfam | PF14111 | Domain of unknown function (DUF4283) | 87 | 231 | 1.4E-17 | IPR025558 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 507 | 669 | 8.4E-28 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 500 | 676 | 1.0E-31 | IPR027417 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 544 | 681 | 14.281523 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 515 | 543 | 9.001844 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 660 | 668 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 382 | 406 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 470 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54270.1 | eif4a-2. member of eIF4A - eukaryotic initiation factor 4A | 3.39E-51 |
| RefSeq | XP_039786278.1 | ATP-dependent RNA helicase drs1-like [Panicum virgatum] | 8.34E-288 |
| Q6Z2Z4 | Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0146600 PE=1 SV=1 | 7.73E-55 | |
| TrEMBL | A0A8T0XNX4 | DUF4283 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG191600 PE=4 SV=1 | 1.89E-286 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology