Basic Information
Locus ID:
AH07.674
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 6562443 | 6564503 | + | AH07.674 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 71,897.62 Da | 40.14 | 91.39 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 202 | 245 | 2.93469E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 208 | 246 | 1.7E-6 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 417 | 658 | 4.2E-32 | IPR001245 |
| SUPERFAMILY | SSF54106 | LysM domain | 202 | 246 | 2.22E-5 | IPR036779 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 398 | 660 | 6.64E-54 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 201 | 255 | 1.0E-8 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 347 | 452 | 4.8E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 453 | 672 | 4.0E-50 | - |
| SMART | SM00257 | LysM_2 | 134 | 182 | 2.0 | IPR018392 |
| SMART | SM00257 | LysM_2 | 202 | 246 | 2.6E-5 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 201 | 245 | 11.031314 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 361 | 669 | 29.007927 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 259 | 278 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 1.51E-150 |
| RefSeq | XP_025812004.1 | protein LYK5 [Panicum hallii] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 1.46E-149 | |
| TrEMBL | A0A3L6RXM9 | Protein LYK5-like OS=Panicum miliaceum OX=4540 GN=C2845_PM11G00210 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology