Basic Information
Locus ID:
AH07.665
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 6413031 | 6414143 | + | AH07.665 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.13 | 39,432.88 Da | 47.63 | 69.59 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 298 | 339 | 9.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 286 | 344 | 1.16E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 345 | 5.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 298 | 338 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 298 | 339 | 12.371254 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 356 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 351 | 370 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15820.1 | RING/U-box superfamily protein. | 9.95E-27 |
| RefSeq | XP_039788541.1 | E3 ubiquitin-protein ligase SIRP1-like [Panicum virgatum] | 3.1E-154 |
| Q9SPL2 | E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1 | 2.25E-19 | |
| TrEMBL | A0A8T0X0V7 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG087200 PE=4 SV=1 | 7.0E-153 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH07.665, CH01.1561 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_2AG0104560 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0574800.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021194 |
| Poaceae | Oryza coarctata | 2 | Oco03G005240, Oco04G004690 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g09820.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G069000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202201 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G033510, Chr15G024830 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC6BG029770 |
| Poaceae | Triticum aestivum | 2 | TraesCS6B02G198800.1, TraesCS6D02G160300.1 |
| Poaceae | Zea mays | 1 | Zm00001eb206330_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44122 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g15100 |