Basic Information
Locus ID:
AH07.634
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Glycerophosphoryl diester phosphodiesterase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 6107134 | 6113337 | - | AH07.634 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 94,838.13 Da | 40.31 | 87.81 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 480 | 777 | 6.98046E-153 | - |
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 165 | 459 | 6.51604E-162 | - |
| Pfam | PF01894 | Uncharacterised protein family UPF0047 | 22 | 122 | 3.2E-30 | IPR001602 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 485 | 773 | 2.4E-20 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 164 | 458 | 4.71E-35 | IPR017946 |
| SUPERFAMILY | SSF111038 | YjbQ-like | 5 | 122 | 4.58E-37 | IPR035917 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 479 | 777 | 1.96E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 164 | 459 | 3.6E-30 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 478 | 778 | 2.0E-46 | IPR017946 |
| Gene3D | G3DSA:2.60.120.460 | - | 1 | 123 | 6.9E-39 | IPR035917 |
| TIGRFAM | TIGR00149 | TIGR00149_YjbQ: secondary thiamine-phosphate synthase enzyme | 7 | 122 | 1.4E-31 | IPR001602 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 480 | 778 | 30.464243 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 165 | 460 | 16.41647 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G58170.1 | SHV3-like 5. | 5.66E-264 |
| RefSeq | XP_039788508.1 | glycerophosphodiester phosphodiesterase GDPDL7-like [Panicum virgatum] | 0 |
| Q9LVN0 | Glycerophosphodiester phosphodiesterase GDPDL7 OS=Arabidopsis thaliana OX=3702 GN=GDPDL7 PE=2 SV=1 | 5.44E-263 | |
| TrEMBL | A0A1E5UUK2 | glycerophosphodiester phosphodiesterase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0022487 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology