Basic Information
Locus ID:
AH07.601
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin fusion degradation protein UFD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 5831049 | 5834532 | + | AH07.601 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 46,846.37 Da | 55.73 | 66.40 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 127 | 298 | 8.8E-80 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 120 | 221 | 2.3E-43 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 223 | 296 | 1.3E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 353 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 304 | 425 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.3 | ubiquitin fusion degradation 1. | 9.8E-144 |
| RefSeq | XP_034569212.1 | ubiquitin fusion degradation protein 1 homolog [Setaria viridis] | 2.64E-237 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 2.51E-72 | |
| TrEMBL | A0A368PHD7 | Ubiquitin fusion degradation protein 1 homolog OS=Setaria italica OX=4555 GN=SETIT_1G061900v2 PE=3 SV=1 | 1.71E-235 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology