Basic Information
Locus ID:
AH07.567
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 5537422 | 5538021 | - | AH07.567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.51 | 20,536.45 Da | 72.93 | 85.63 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 148 | 191 | 5.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 144 | 197 | 1.61E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 196 | 1.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 149 | 190 | 7.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 149 | 191 | 12.061441 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G35480.1 | RING-H2 finger A3B. Encodes a putative RING-H2 finger protein RHA3b. | 2.07E-10 |
| RefSeq | XP_025811138.1 | RING-H2 finger protein ATL56-like [Panicum hallii] | 2.45E-65 |
| Q9ZT49 | Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1 | 2.03E-9 | |
| TrEMBL | A0A3L6QJS9 | RING-H2 finger protein ATL56 OS=Panicum miliaceum OX=4540 GN=C2845_PM12G04580 PE=4 SV=1 | 2.24E-63 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology