Basic Information
Locus ID:
AH07.463
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
ARF6
Description:
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 4710296 | 4721491 | + | AH07.463 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 175,056.16 Da | 57.44 | 76.95 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10017 | B3_DNA | 135 | 236 | 5.79391E-23 | IPR003340 |
| CDD | cd14066 | STKc_IRAK | 1247 | 1526 | 2.78942E-89 | - |
| Pfam | PF02309 | AUX/IAA family | 759 | 852 | 1.6E-7 | IPR033389 |
| Pfam | PF00069 | Protein kinase domain | 1243 | 1444 | 2.2E-43 | IPR000719 |
| Pfam | PF02362 | B3 DNA binding domain | 136 | 237 | 6.6E-22 | IPR003340 |
| Pfam | PF06507 | Auxin response factor | 262 | 345 | 9.8E-34 | IPR010525 |
| SUPERFAMILY | SSF101936 | DNA-binding pseudobarrel domain | 121 | 265 | 3.4E-48 | IPR015300 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1225 | 1544 | 2.97E-76 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 757 | 843 | 8.5E-8 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1317 | 1540 | 4.9E-56 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 762 | 856 | 2.1E-27 | - |
| Gene3D | G3DSA:2.40.330.10 | - | 134 | 237 | 3.8E-45 | IPR015300 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 1219 | 1316 | 2.1E-33 | - |
| Gene3D | G3DSA:2.30.30.1040 | - | 300 | 372 | 3.1E-35 | - |
| SMART | SM00220 | serkin_6 | 1241 | 1472 | 1.3E-31 | IPR000719 |
| SMART | SM01019 | B3_2 | 136 | 238 | 1.6E-25 | IPR003340 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1241 | 1511 | 35.933586 | IPR000719 |
| ProSiteProfiles | PS50863 | B3 DNA-binding domain profile. | 136 | 238 | 13.35195 | IPR003340 |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 767 | 851 | 24.837242 | IPR000270 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1363 | 1375 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 1247 | 1269 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1082 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1136 | 1161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1025 | 1039 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1135 | 1164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1040 | 1054 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30330.1 | auxin response factor 6. Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167. | 0 |
| RefSeq | XP_025823935.1 | auxin response factor 6-like isoform X1 [Panicum hallii] | 0 |
| A2X1A1 | Auxin response factor 6 OS=Oryza sativa subsp. indica OX=39946 GN=ARF6 PE=3 SV=1 | 0 | |
| TrEMBL | A0A3L6QDF3 | Auxin response factor OS=Panicum miliaceum OX=4540 GN=C2845_PM12G03720 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||