Basic Information
Locus ID:
AH07.4027
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
A domain family that is part of the cupin metalloenzyme superfamily.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 57283816 | 57291970 | + | AH07.4027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 131,560.75 Da | 52.32 | 59.56 | -0.92 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1000 | 1103 | 7.4E-16 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 680 | 1143 | 6.32E-35 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 664 | 927 | 3.7E-90 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 941 | 1129 | 2.7E-70 | - |
| SMART | SM00558 | cupin_9 | 782 | 1120 | 3.9E-76 | IPR003347 |
| SMART | SM00384 | AT_hook_2 | 262 | 274 | 1.4 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 157 | 169 | 39.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 67 | 79 | 5.3 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 209 | 221 | 0.84 | IPR017956 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 801 | 1120 | 27.567392 | IPR003347 |
| PRINTS | PR00929 | AT-hook-like domain signature | 260 | 270 | 7.8E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 207 | 218 | 7.8E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 67 | 77 | 7.8E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 141 | 156 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 538 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 337 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 990 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 542 | 557 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 72 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 273 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 185 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 949 | 1007 | - | - |
| Coils | Coil | Coil | 326 | 346 | - | - |
| Coils | Coil | Coil | 449 | 469 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G62310.1 | transcription factor jumonji (jmjC) domain-containing protein. | 2.34E-207 |
| RefSeq | XP_034578027.1 | lysine-specific demethylase JMJ25-like [Setaria viridis] | 0 |
| C0SV12 | Lysine-specific demethylase JMJ29 OS=Arabidopsis thaliana OX=3702 GN=JMJ29 PE=2 SV=1 | 2.25E-206 | |
| TrEMBL | A0A4U6WJI7 | Lysine-specific demethylase JMJ25-like OS=Setaria viridis OX=4556 GN=SEVIR_1G383000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology