Basic Information
Locus ID:
AH07.3999
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 57071243 | 57080031 | + | AH07.3999 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 129,832.86 Da | 60.88 | 73.84 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 704 | 744 | 2.52944E-19 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 702 | 749 | 3.1E-11 | - |
| Pfam | PF00891 | O-methyltransferase domain | 1013 | 1166 | 7.2E-26 | IPR001077 |
| SUPERFAMILY | SSF57850 | RING/U-box | 704 | 752 | 4.59E-8 | - |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 994 | 1165 | 2.05E-26 | IPR029063 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 903 | 993 | 2.27E-17 | IPR036390 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 997 | 1169 | 6.8E-41 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 691 | 755 | 1.3E-13 | IPR013083 |
| Gene3D | G3DSA:1.10.10.10 | - | 891 | 996 | 5.5E-22 | IPR036388 |
| ProSiteProfiles | PS51683 | SAM-dependent O-methyltransferase class II-type profile. | 909 | 1175 | 42.109619 | IPR016461 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 705 | 744 | 10.822189 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 323 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 136 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 225 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 180 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 189 | - | - |
| Coils | Coil | Coil | 77 | 97 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 2.87E-140 |
| RefSeq | XP_025804336.1 | uncharacterized protein LOC112883265 isoform X2 [Panicum hallii] | 0 |
| Q6K9X3 | Nicotinate N-methyltransferase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=NANMT1 PE=1 SV=1 | 5.08E-147 | |
| TrEMBL | A0A2S3GUQ7 | RING-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G453800 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology