Basic Information
Locus ID:
AH07.3789
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 55477357 | 55482023 | - | AH07.3789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.26 | 92,729.16 Da | 56.80 | 77.62 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 39 | 198 | 3.36429E-38 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 774 | 815 | 3.20691E-23 | - |
| Pfam | PF00069 | Protein kinase domain | 500 | 700 | 1.5E-20 | IPR000719 |
| Pfam | PF04564 | U-box domain | 770 | 842 | 4.0E-16 | IPR003613 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 467 | 699 | 3.14E-38 | IPR011009 |
| SUPERFAMILY | SSF57850 | RING/U-box | 757 | 841 | 4.68E-23 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 72 | 163 | 3.77E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 754 | 849 | 6.1E-26 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 20 | 169 | 2.2E-5 | IPR014729 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 486 | 736 | 1.1E-39 | - |
| SMART | SM00504 | Ubox_2 | 773 | 837 | 1.0E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 769 | 844 | 29.49333 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 493 | 774 | 22.12467 | IPR000719 |
| ProSitePatterns | PS00109 | Tyrosine protein kinases specific active-site signature. | 613 | 625 | - | IPR008266 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 35 | - | - |
| Coils | Coil | Coil | 375 | 395 | - | - |
| Coils | Coil | Coil | 323 | 358 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 9.44E-104 |
| RefSeq | XP_025799164.1 | U-box domain-containing protein 33-like isoform X1 [Panicum hallii] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 9.18E-103 | |
| TrEMBL | A0A2S3GUR7 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_1G453400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH07.3789, BH07.3609, CH07.316, CH07.3685 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151050, gene-QOZ80_2BG0206470 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0478990.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_037771 |
| Poaceae | Oryza coarctata | 2 | Oco03G025760, Oco04G026230 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g57700.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G324800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0604597, Pt_Chr0605662 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G026650, Chr13G000470 |
| Poaceae | Thinopyrum elongatum | 2 | Tel5E01G339600, Tel5E01G341900 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC5AG032910, gene_TRIDC5AG033150 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS5A02G203900.1, TraesCS5A02G205800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb190970_P005 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39767, nbis-gene-8270 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17452 |