Basic Information
Locus ID:
AH07.3782
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CAF1 family ribonuclease
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 55412613 | 55413476 | + | AH07.3782 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.98 | 32,185.14 Da | 37.89 | 85.96 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04857 | CAF1 family ribonuclease | 27 | 149 | 1.7E-8 | IPR006941 |
| Pfam | PF04857 | CAF1 family ribonuclease | 172 | 255 | 6.8E-6 | IPR006941 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 21 | 280 | 3.13E-87 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 13 | 282 | 7.1E-98 | IPR036397 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32070.1 | Polynucleotidyl transferase, ribonuclease H-like superfamily protein. | 9.26E-146 |
| RefSeq | XP_025810928.1 | probable CCR4-associated factor 1 homolog 7 [Panicum hallii] | 2.95E-206 |
| Q9SKZ2 | Probable CCR4-associated factor 1 homolog 7 OS=Arabidopsis thaliana OX=3702 GN=CAF1-7 PE=2 SV=2 | 8.89E-145 | |
| TrEMBL | A0A2T7FDA1 | poly(A)-specific ribonuclease OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G422600 PE=3 SV=1 | 6.68E-205 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology