Basic Information
Locus ID:
AH07.3665
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| AH07 | 54397622 | 54404678 | - | AH07.3665 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 114,596.56 Da | 43.82 | 64.15 | -0.75 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 667 | 749 | 2.2E-11 | IPR005162 |
| Pfam | PF02045 | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 184 | 239 | 5.0E-27 | IPR001289 |
| Gene3D | G3DSA:6.10.250.2430 | - | 183 | 243 | 1.5E-31 | - |
| SMART | SM00521 | cbf3 | 181 | 242 | 5.1E-38 | IPR001289 |
| ProSiteProfiles | PS51152 | NF-YA/HAP2 family profile. | 182 | 242 | 38.96944 | IPR001289 |
| PRINTS | PR00616 | CCAAT-binding transcription factor subunit B signature | 185 | 207 | 3.6E-23 | IPR001289 |
| PRINTS | PR00616 | CCAAT-binding transcription factor subunit B signature | 216 | 239 | 3.6E-23 | IPR001289 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 1006 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 989 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 234 | 271 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 16 | 63 | - | - |
| Coils | Coil | Coil | 392 | 412 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54160.1 | nuclear factor Y, subunit A5. Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought. | 8.81E-30 |
| RefSeq | XP_039776051.1 | nuclear transcription factor Y subunit A-4-like isoform X5 [Panicum virgatum] | 1.28E-115 |
| Q9SYH4 | Nuclear transcription factor Y subunit A-5 OS=Arabidopsis thaliana OX=3702 GN=NFYA5 PE=2 SV=1 | 8.58E-29 | |
| TrEMBL | A0A3L6QJ95 | Nuclear transcription factor Y subunit OS=Panicum miliaceum OX=4540 GN=C2845_PM12G28670 PE=3 SV=1 | 2.13E-121 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||